Virtual Lab Inspires Mad Scientists of the Future

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When I was younger, I used to play at being a mad scientist. My scientific endeavours ranged from George’s Marvellous Medicine style concoctions – mixing a little bit of everything I could get my hands on together in a container (though not, thankfully, feeding it to my brother) – to hiding foodstuffs in corners and watching them go mouldy (sorry Mum). It goes without saying that I also built time machines and spaceships. I suppose I was rather an interdisciplinary scientist, but then all the good ones on TV are.

So when I started secondary school and had a WHOLE CLASS dedicated to science, you may have expected me to be disappointed by the rather pedestrian experiments, after all there were no time machines. However, these experiments tended to work and have interesting results, so that I needed a lot less imagination (the use of which had become rather uncool on moving up to the big school). Iodine turns black when you drop it on potatoes! The enzymes in liver make hydrogen peroxide go all foamy!

The more advanced my scientific education got, however, the less the experiments seemed to work. Of course, any scientist reading this will note that a true experiment doesn’t work or not work, but what I mean is that these pre-prescribed experiments were supposed to be repeatable and had an expected outcome that was meant to demonstrate a principal. Sometimes nothing happened because my lab partner and I were not paying attention/melting things with Bunsen burners (a learning experience). However, sometimes this was due to antique laboratory equipment or reagents (frustrating, but also preparation for later laboratory disappointments). Whilst at school I went on two work placements in real laboratories, and was in over my head. The laboratory equipment was as far from what I knew from school as a potato is from a time machine. Whilst I had found secondary school science very entertaining, it was these work placements that really gave me a glimpse of how exciting a scientific career could be.

Early university labs got a bit more upmarket, but more often than not were disconnected to front line science. Of course, practical labs are can be very useful for illustrating textbook principals and teaching the basics of lab science and experimental design. Label your tubes! Write everything down! Don’t pick your nose! Perhaps the disconnect is less obvious in ecology (I hear they still use quadrats, though data analysis has moved on significantly) but the gap between real life molecular biology, biochemistry and especially biotechnology and those in the undergraduate practicals is often vast.  This is in no way the fault of the universities.  Large, safe, reproducible experiments that teach students something are very difficult to organise.  Most notably, laboratory equipment is very expensive to obtain and maintain. It’s no wonder that universities don’t want 500 undergraduates wearing their safety goggles backwards and shouting “great Scott!” next to next generation sequencing apparatus. During my PhD, I gave a brief talk to early stage biology undergraduates about the methods I was employing for my research (since I didn’t actually have any results yet). Many came to me afterwards saying how exciting it was to see the application of what they were learning in classes, and I like to think that this inspired some of them.  Such talks from researchers are certainly valuable to bridge the gap between undergraduate and career science, but at the end of the day are just another lecture to sit through with a hangover. What is really needed is something more interactive.

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And then there was Labster – a “3D learning environment based on a virtual lab”. Not only do you get to muck about with a million dollars worth of laboratory equipment, but you get to solve cases based on real life problems. Science! Videogames! CSI! Naturally, I had to have a go (for research purposes of course). To my shame, upon picking up a sample in my virtual pipette, I was reminded that I couldn’t use the same pipette tip to pick up another sample. I also took great pleasure in causing an explosion without any life or career threatening repercussions (in retrospect, maybe not a good example to set young scientists). Certainly, it can’t help develop awesome motor skills required for superstar pipette usage (just saying), and it won’t teach you to open a falcon tube with one hand, but it can show you what you need to put in your PCR reaction (although it does remind you that you have forgotten your template BEFORE you run the PCR, go off to lunch, cast and run your gel and find out there’s nothing in your lanes).

Labster also goes one better, because whilst the PCR is running it shows you what is going on in those tiny tubes filled with clear liquid (molecular biology seems to be 90% pipetting clear liquid about) through some pretty striking animations. Many lucky people can run hundreds of PCRs with no trouble and never have to really understand (or remember) what’s going on at each step, but I can’t stress how important it is to visualise these steps when troubleshooting. To keep you on your toes, there are questions following each procedure, to make sure that you really do understand what is going on.

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It’s not just PCR. You also have access to, for example, a fermentor and chromatography and DNA sequencing equipment. The cases you get to solve range from my favourite CSI case – a whodunnit involving blood samples – to a medical genetics cases, and are developing all the time. You don’t have to be a geek to find it really cool, though it helps.

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Labster is a unique and valuable learning experience that connects classroom theory with the biotech industry, and could help to make scientists of the kids that are currently hoping their mum won’t find the mouldy Philadelphia behind the radiator.

There’s always time for a hygge

Writing about my first impressions of Copenhagen could easily take the form of a list. Obviously, there’s the cyclists, the style, the incredible bars and cafes, the architecture, the canals, the expense, the language…. but other than the cycling – which no doubt will warrant its own entry once I get involved – there’s one aspect that’s really got my attention.  And interestingly, this aspect has its own word: hygge.

I think it says a lot that there’s no real translation of this word in English. Google translate comes up with “cosiness.” This is the translation I originally heard when a Copenhagen local was explaining the term to me. She mentioned hygge when we were driving around the Danish city for the first time and I commented on the number of bakeries. She said that food is a very important part of danish culture, and that sitting with friends and family, having a cosy time and enjoying breads or pastries was a “hygge”. A word for having a good time with food? That really got my attention.

So my first impression of hygge was of this cosiness, that it involved friends and family, and food. I heard the word applied to lighting candles in an evening, and to the atmosphere of small, warm pubs and so, unsurprisingly I started to associate the word with warmth, and thought that it was probably more of a winter thing. It seems I still hadn’t quite got it.

So fast forward to moving here and after a very long winter, the sun finally comes out. I’m struck by the number of people just sitting around.  In tables outside cafes, on the edge of the canal, on park benches. They were just sitting there, chatting, maybe eating and drinking. You might think I’m talking about hobos and teenage layabouts, but these people are from all parts of society. Smart, professional looking people spend many hours in cafes at weekends enjoying brunch.  Just sitting, nibbling, drinking and chatting with their friends or family. And I can report that there weren’t many smartphones about. Whilst friends, young and old enjoy a coffee or a beer and a chat whilst dangling their legs over the side of canal. It’s not even that warm yet so it can’t be described as a physical warmth or temperature, although most outdoor areas in pubs and cafes do supply blankets. I find out (from wikipedia) that sitting on a long summer evening grilling a sausage and drinking beer is also a hygge.

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(image from visitdenmark.co.uk)

Back to me, and my recent move, I am finding it hard to sit still. I’m unpacking and tidying, shopping and sorting, e-mailing, job hunting, meal planning and budgeting. Not properly busy of course, but constantly buzzing around from job to job. So maybe you can see why these crowds of people just sitting around have so fascinated me. This isn’t to say that the Danish are layabouts. I have it on good authority that long hours in the office are not unusual. I don’t think it’s about the amount of free time, but rather how you spend it. The partitioning of your work brain from your friends and family brain. The ability to relax with friends and watch the world go by. It sounds good, doesn’t it? Add into that pastry, beer, coffee or sausage (maybe not all at once) and it sounds perfect.

So maybe we should have a word for hygge. Or maybe we should just steal the Danish one (like we’ve adopted earworm from German). I’m definitely going to try. Once I’ve applied for a few jobs, cleaned the flat, gone for a run, made some soup and bought some furniture, or course…